| VA | From | Airport | To | Destination | Type | Distance miles | Frequency | Competitors | |
|---|---|---|---|---|---|---|---|---|---|
| CIF | CYPR | Prince Rupert | CYQT | Thunder Bay | Medium | 1558.2 | 1 | ||
| CIF | CYPR | Prince Rupert | CYRT | Rankin Inlet | Medium | 1280.2 | 0 | ||
| OSA | CYPR | Prince Rupert | CYYJ | Victoria Intl | Local | 427.7 | 0 | ||
| SAA | CYPR | Prince Rupert | PANC | Stevens Anchorage Intl | Regional | 745.9 | 1 | ||
| SKA | CYPR | Prince Rupert | CYDB | Burwash | Regional | 505.2 | 1 | ||
| SKA | CYPR | Prince Rupert | KSEA | Seattle-Tacoma Intl | Regional | 512.3 | 0 | ||
| UFA | CYPR | Prince Rupert | CYZY | Mackenzie | Local | 260.1 | 0 | ||
| UFA | CYPR | Prince Rupert | PAWG | Wrangell | Local | 147.3 | 1 | ||
| UFA | CYPR | Prince Rupert | CYZP | Sandspit | Local | 78.7 | 0 | ||
| UFA | CYPR | Prince Rupert | CYZT | Port Hardy | Local | 243.8 | 1 | ||
| UFA | CYPR | Prince Rupert | PASI | Sitka Rocky Gutierrez | Local | 234.7 | 0 |