| VA | From | Airport | To | Destination | Type | Distance miles | Frequency | Competitors | |
|---|---|---|---|---|---|---|---|---|---|
| CIF | HSSJ | Juba | FLLS | Lusaka Intl | Medium | 1226.3 | 0 | ||
| CIF | HSSJ | Juba | HLLB | Benghazi - Benina | Medium | 1753.1 | 1 | ||
| RSQ | HSSJ | Juba | HSSS | Khartoum | Regional | 645.5 | 0 | ||
| RSQ | HSSJ | Juba | HBBA | Bujumbura Intl | Regional | 510.2 | 1 | ||
| SAA | HSSJ | Juba | HUEN | Entebbe Intl | Local | 294.2 | 3 | ||
| SKA | HSSJ | Juba | HBBA | Bujumbura Intl | Regional | 510.2 | 0 | ||
| SKA | HSSJ | Juba | OMDB | Dubai Intl | Medium | 1834.3 | 1 |