| VA | From | Airport | To | Destination | Type | Distance miles | Frequency | Competitors | |
|---|---|---|---|---|---|---|---|---|---|
| SCA | MHSC | Comayagua - Coronel Enrique Soto Cano AB | MGGT | Guatemala City - La Aurora Intl | Local | 169.2 | 0 | ||
| SCA | MHSC | Comayagua - Coronel Enrique Soto Cano AB | MROC | San Jose - Juan Santamaria Intl | Local | 330.7 | 0 |