| VA | From | Airport | To | Destination | Type | Distance miles | Frequency | Competitors | |
|---|---|---|---|---|---|---|---|---|---|
| AAW | PAYA | Yakutat | MBGT | Grand Turk I. - Grand Turk Intl | Long | 3647.4 | 1 | ||
| AAW | PAYA | Yakutat | ZMMN | ZMMN | Long | 3634.2 | 0 | ||
| ATR | PAYA | Yakutat | PANC | Stevens Anchorage Intl | Local | 322.5 | 0 | ||
| CFC | PAYA | Yakutat | PAWD | Seward | Local | 296.5 | 1 | ||
| CFC | PAYA | Yakutat | PAJN | Juneau Intl | Local | 171.8 | 2 | ||
| CFC | PAYA | Yakutat | PANC | Stevens Anchorage Intl | Local | 322.5 | 2 | ||
| CIF | PAYA | Yakutat | UHPP | Petropavlovsk-Kamchatsk - Yelizovo | Medium | 2015.3 | 1 | ||
| CIF | PAYA | Yakutat | CYQB | Quebec/Lesage Intl | Medium | 2449.6 | 0 | ||
| OSA | PAYA | Yakutat | PASI | Sitka Rocky Gutierrez | Local | 200.2 | 0 | ||
| OSA | PAYA | Yakutat | PANC | Stevens Anchorage Intl | Local | 322.5 | 1 | ||
| SCA | PAYA | Yakutat | PAIL | Iliamna | Local | 461.9 | 0 | ||
| UFA | PAYA | Yakutat | PAJN | Juneau Intl | Local | 171.8 | 5 | ||
| UFA | PAYA | Yakutat | PAFE | Kake | Local | 237.0 | 0 |