| VA | From | Airport | To | Destination | Type | Distance miles | Frequency | Competitors | |
|---|---|---|---|---|---|---|---|---|---|
| AAW | RJFU | Nagasaki | KMSO | Missoula Intl | Long | 4897.8 | 1 | ||
| ACF | RJFU | Nagasaki | RJBH | Hiroshimanishi | Local | 152.2 | 1 | ||
| ACF | RJFU | Nagasaki | RKPU | Ulsan | Local | 163.0 | 0 | ||
| CIF | RJFU | Nagasaki | LFPG | Paris - Charles-De-Gaulle | Long | 5138.4 | 0 | ||
| CIF | RJFU | Nagasaki | NFTF | Nukualofa - Fuaamotu Intl | Long | 4522.5 | 1 | ||
| NAE | RJFU | Nagasaki | OPLA | Lahore Intl | Medium | 2785.4 | 0 | ||
| SAA | RJFU | Nagasaki | RJOA | Hiroshima | Local | 175.6 | 1 | ||
| SAA | RJFU | Nagasaki | RKPC | Cheju Intl | Local | 175.4 | 1 | ||
| SSF | RJFU | Nagasaki | ROIG | Ishigaki I - Ishigaki | Regional | 595.9 | 0 | ||
| SSF | RJFU | Nagasaki | RJBB | Osaka - Kansai Intl | Local | 281.1 | 1 | ||
| UFA | RJFU | Nagasaki | YPDN | Darwin Intl | Medium | 2720.4 | 1 |